bbpost_tot: Posterior inference for each individual.

Description Usage Arguments Author(s)

View source: R/RcppExports.R

Description

Posterior inference for each individual.

Usage

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bbpost_tot(ocounts, osize, ploidy, prob_geno, seq_error, bias_val, od_param,
  outlier = FALSE, out_prop = 0.1, out_mean = 0.5, out_disp = 1/3)

Arguments

ocounts

The vector of counts of the reference allele of the offspring.

osize

The vector of total reads of the offspring.

ploidy

The ploidy of the species

prob_geno

The distribution of genotypes.

seq_error

The sequencing error rate.

bias_val

The bias parameter. A value of 1 indicates no bias.

od_param

The over-dispersion parameter. Should be in [0, 1). A value of 0 reduces to the binomial model.

outlier

A logical. Should we include the outlier model (TRUE) or not (FALSE)?

out_prop

The proportion of observations that are outliers.

out_mean

The mean of outlier distribution.

out_disp

The overdispersion parameter of the outlier distribution.

Author(s)

David Gerard


dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.