Description Usage Arguments Author(s)
E-step for the parents.
1 2 | get_parent_outprop(pcounts, psize, ploidy, pgeno, d, eps, tau, out_prop,
out_mean, out_disp)
|
pcounts |
The number of counts of the reference allele we observe in a parent. |
psize |
The total number of reads we observe in a parent. |
ploidy |
An integer. The ploidy of the species. This is assumed to be the same for each individual. |
pgeno |
The genotype of the parent. |
d |
Same as |
eps |
Same as |
tau |
Same as |
out_prop |
The proportion of points that are outliers. Defaults
(quite arbitrarily) to |
out_mean |
The mean of beta-binomial for the outlier distribution.
Defaults to |
out_disp |
The overdispersion parameter of the outlier distribution.
Defaults to |
David Gerard
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