Description Usage Arguments Value Author(s)
Gradient of obj_offspring using the original parameterization.
1 | grad_offspring_original(ocounts, osize, ploidy, prob_geno, d, eps, tau)
|
ocounts |
The observed counts of the refernce allele for each individual. |
osize |
The observed number of reads for each individuals. |
ploidy |
An integer. The ploidy of the species. This is assumed to be the same for each individual. |
prob_geno |
The allele frequencies of the genotypes. See |
d |
The sequencing bias parameter. |
eps |
The sequencing error rate |
tau |
The overdisperion parameter. |
A NumericVector of length three with the partial derivatives of
d, eps, and tau, in that order.
David Gerard
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