est_seq_error: Estimate sequencing error from counts.

Description Usage Arguments Author(s)

View source: R/est_seq.R

Description

Assuming that the reference allele is in great enough quantities so that there are enough points

Usage

1
est_seq_error(ncounts, ssize, ploidy = NULL, eps = NULL)

Arguments

ncounts

A vector of non-negative integers. The ith element is the number of counts of the ith sample.

ssize

A vector of positive integers. The ith element is the total number of counts of the ith sample.

ploidy

The ploidy of the species. Cannot be NULL if eps is NULL.

eps

To estimate the sequencing erorr, we will only use points such that ncounts / ssize >= eps. If ploidy is specified and eps = NULL, then eps will be chosen by a heuristic.

Author(s)

David Gerard


dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.