Description Usage Arguments Author(s)
Posterior inference under the beta-binomial model with outliers. If od_param = 0
, then
this reduces to the binomial model with outliers.
1 2 | bbpost_double(x, n, ploidy, prob_geno, seq_error, bias_val, od_param,
outlier = FALSE, out_prop = 0.1, out_mean = 0.5, out_disp = 1/3)
|
x |
The observed number of reference alleles. |
n |
The total number of reads. |
ploidy |
The ploidy of the species |
prob_geno |
The distribution of genotypes. |
seq_error |
The sequencing error rate. |
bias_val |
The bias parameter. A value of 1 indicates no bias. |
od_param |
The over-dispersion parameter. Should be in [0, 1). A value of 0 reduces to the binomial model. |
outlier |
A logical. Should we include the outlier model ( |
out_prop |
The proportion of observations that are outliers. |
out_mean |
The mean of outlier distribution. |
out_disp |
The overdispersion parameter of the outlier distribution. |
David Gerard
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