Description Usage Arguments Author(s)
E step in EM algorithm for a single individual.
1 2 | get_out_prop(ocounts, osize, ploidy, prob_geno, d, eps, tau, out_prop, out_mean,
out_disp)
|
ocounts |
The observed counts of the refernce allele for each individual. |
osize |
The observed number of reads for each individuals. |
ploidy |
An integer. The ploidy of the species. This is assumed to be the same for each individual. |
prob_geno |
The allele frequencies of the genotypes. See |
d |
The sequencing bias parameter. |
eps |
The sequencing error rate |
tau |
The overdisperion parameter. |
out_prop |
The proportion of points that are outliers. Defaults
(quite arbitrarily) to |
out_mean |
The mean of beta-binomial for the outlier distribution.
Defaults to |
out_disp |
The overdispersion parameter of the outlier distribution.
Defaults to |
David Gerard
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