Description Usage Arguments Value
Gradient of obj_offspring_weights
using original parameterization
1 2 | grad_offspring_weights_original(ocounts, osize, weight_vec, ploidy, prob_geno,
d, eps, tau)
|
ocounts |
The observed counts of the refernce allele for each individual. |
osize |
The observed number of reads for each individuals. |
weight_vec |
A vector of weights between 0 and 1 (do not need to add up to 1). |
ploidy |
An integer. The ploidy of the species. This is assumed to be the same for each individual. |
prob_geno |
The allele frequencies of the genotypes. See |
d |
The sequencing bias parameter. |
eps |
The sequencing error rate |
tau |
The overdisperion parameter. |
A NumericVector of length three with the partial derivatives of
d
, eps
, and tau
, in that order.
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