getMotifDistMat.jaspar: getMotifDistMat.jaspar
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R
Description
Usage
Arguments
Value
Description
Retrieve motif a comparison table from JASPAR annotation website and construct a dissimilarity matrix for given
motif IDs
Usage
1
getMotifDistMat.jaspar(motifIds = NULL, scoreCol = "Ncor")
Arguments
motifIds
string vector of motif ids whose dissimilarities are retrieved
scoreCol
namew of the annotation column in the JASPAR annotation that contains the motif similarity
Value
a matrix of motif DISsimilarities
demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.
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Description Usage Arguments Value
Description
Retrieve motif a comparison table from JASPAR annotation website and construct a dissimilarity matrix for given motif IDs
Usage
1 | getMotifDistMat.jaspar(motifIds = NULL, scoreCol = "Ncor")
|
Arguments
motifIds |
string vector of motif ids whose dissimilarities are retrieved |
scoreCol |
namew of the annotation column in the JASPAR annotation that contains the motif similarity |
Value
a matrix of motif DISsimilarities
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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