build.designmatrix.single: Constructs a design matrix for running CSIDE with a single...
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
build.designmatrix.single R Documentation
Constructs a design matrix for running CSIDE with a single explanatory variable
Description
The design matrix contains an intercept column and a column of the explanatory variable.
Usage
build.designmatrix.single(myRCTD, explanatory.variable)
Arguments
myRCTD
an RCTD object with annotated cell types e.g. from the run.RCTD function.
explanatory.variable
a named numeric vector representing the explanatory variable used for explaining differential expression in CSIDE. Names of the variable
are the SpatialRNA pixel names, and values should be standardized between 0 and 1.
Value
A design matrix containing the covariates for running CSIDE. The rownames represent pixel names and
are a subset of the pixels in the SpatialRNA object. The columns each represent a covariate for
explaining differential expression.
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| build.designmatrix.single | R Documentation |
Constructs a design matrix for running CSIDE with a single explanatory variable
Description
The design matrix contains an intercept column and a column of the explanatory variable.
Usage
build.designmatrix.single(myRCTD, explanatory.variable)
Arguments
myRCTD |
an |
explanatory.variable |
a named numeric vector representing the explanatory variable used for explaining differential expression in CSIDE. Names of the variable
are the |
Value
A design matrix containing the covariates for running CSIDE. The rownames represent pixel names and
are a subset of the pixels in the SpatialRNA object. The columns each represent a covariate for
explaining differential expression.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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