plot_cond_occur: Barplot of the confident counts for each cell type
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
plot_cond_occur R Documentation
Barplot of the confident counts for each cell type
Description
Plots the number of confident labels in 'full_mode'. Saves as 'cell_type_occur.pdf'
Usage
plot_cond_occur(cell_type_names, resultsdir, weights, puck)
Arguments
cell_type_names
list of cell type names
resultsdir
output directory
weights
a dataframe of RCTD output weights (stored in the RCTD object)
puck
an object of type SpatialRNA
Value
returns ggplot2 object
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| plot_cond_occur | R Documentation |
Barplot of the confident counts for each cell type
Description
Plots the number of confident labels in 'full_mode'. Saves as 'cell_type_occur.pdf'
Usage
plot_cond_occur(cell_type_names, resultsdir, weights, puck)
Arguments
cell_type_names |
list of cell type names |
resultsdir |
output directory |
weights |
a dataframe of RCTD output weights (stored in the RCTD object) |
puck |
an object of type SpatialRNA |
Value
returns ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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