fitPixels: Runs the RCTD algorithm
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
fitPixels R Documentation
Runs the RCTD algorithm
Description
If in doublet mode, fits at most two cell types per pixel. It classifies each pixel as 'singlet' or 'doublet' and searches for the cell types
on the pixel. If in full mode, can fit any number of cell types on each pixel. In multi mode, cell types are added using a greedy algorithm,
up to a fixed number.
Usage
fitPixels(RCTD, doublet_mode = "doublet")
Arguments
RCTD
an RCTD object after running the choose_sigma_c function.
doublet_mode
character string, either "doublet", "multi", or "full" on which mode to run RCTD. Please see above description.
Value
an RCTD object containing the results of the RCTD algorithm.
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| fitPixels | R Documentation |
Runs the RCTD algorithm
Description
If in doublet mode, fits at most two cell types per pixel. It classifies each pixel as 'singlet' or 'doublet' and searches for the cell types on the pixel. If in full mode, can fit any number of cell types on each pixel. In multi mode, cell types are added using a greedy algorithm, up to a fixed number.
Usage
fitPixels(RCTD, doublet_mode = "doublet")
Arguments
RCTD |
an |
doublet_mode |
|
Value
an RCTD object containing the results of the RCTD algorithm.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.