import_weights: Assigns a cell type 'weights' matrix to an 'RCTD' object
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
View source: R/postProcessing.R
import_weights R Documentation
Assigns a cell type 'weights' matrix to an RCTD object
Description
Assigns a cell type 'weights' matrix to an RCTD object
Usage
import_weights(myRCTD, weights)
Arguments
myRCTD
a RCTD object to be assigned weights.
weights
a matrix of weights (pixels by cell types). weights must be normalized
to have rows sum to 1. Furthermore, rownames and colnames must be assigned as
pixel names and cell types respectively.
Value
the RCTD object with weights assigned.
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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View source: R/postProcessing.R
| import_weights | R Documentation |
Assigns a cell type 'weights' matrix to an RCTD object
Description
Assigns a cell type 'weights' matrix to an RCTD object
Usage
import_weights(myRCTD, weights)
Arguments
myRCTD |
a |
weights |
a matrix of weights (pixels by cell types). weights must be normalized to have rows sum to 1. Furthermore, rownames and colnames must be assigned as pixel names and cell types respectively. |
Value
the RCTD object with weights assigned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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