plot_weights: Spatially plot the confident weights for each cell type
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
plot_weights R Documentation
Spatially plot the confident weights for each cell type
Description
Plots the confident weights for each cell type as in full_mode. Saves as 'cell_type_weights.pdf'
Usage
plot_weights(cell_type_names, puck, resultsdir, weights)
Arguments
cell_type_names
list of cell type names
puck
an object of type SpatialRNA
resultsdir
output directory
weights
a dataframe of RCTD output weights (stored in the RCTD object)
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| plot_weights | R Documentation |
Spatially plot the confident weights for each cell type
Description
Plots the confident weights for each cell type as in full_mode. Saves as 'cell_type_weights.pdf'
Usage
plot_weights(cell_type_names, puck, resultsdir, weights)
Arguments
cell_type_names |
list of cell type names |
puck |
an object of type SpatialRNA |
resultsdir |
output directory |
weights |
a dataframe of RCTD output weights (stored in the RCTD object) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.