plot_doublets: Plots all doublets in space
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
plot_doublets R Documentation
Plots all doublets in space
Description
saves as 'all_doublets.pdf'
Usage
plot_doublets(puck, doublets, resultsdir, cell_type_names)
Arguments
puck
an object of type SpatialRNA
doublets
a dataframe of RCTD results restricted to doublets
resultsdir
output directory
cell_type_names
list of cell type names
Value
returns ggplot2 object
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| plot_doublets | R Documentation |
Plots all doublets in space
Description
saves as 'all_doublets.pdf'
Usage
plot_doublets(puck, doublets, resultsdir, cell_type_names)
Arguments
puck |
an object of type SpatialRNA |
doublets |
a dataframe of RCTD results restricted to doublets |
resultsdir |
output directory |
cell_type_names |
list of cell type names |
Value
returns ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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