make_de_plots_spatial: Makes spatial gene CSIDE plots (colored by two discrete...
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
make_de_plots_spatial R Documentation
Makes spatial gene CSIDE plots (colored by two discrete regions) on RCTD object, after running CSIDE
Description
These plots are colored by two discrete regions based on high or low explanatory variable values.
Bold points represent expressed, whereas unbold points represent pixels not expressing the gene.
Usage
make_de_plots_spatial(myRCTD, datadir)
Arguments
myRCTD
RCTD object containing de_results, after running CSIDE
datadir
output directory
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| make_de_plots_spatial | R Documentation |
Makes spatial gene CSIDE plots (colored by two discrete regions) on RCTD object, after running CSIDE
Description
These plots are colored by two discrete regions based on high or low explanatory variable values. Bold points represent expressed, whereas unbold points represent pixels not expressing the gene.
Usage
make_de_plots_spatial(myRCTD, datadir)
Arguments
myRCTD |
|
datadir |
output directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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