make_de_plots_replicates: Makes spatial gene CSIDE plots (colored by two discrete...
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
make_de_plots_replicates R Documentation
Makes spatial gene CSIDE plots (colored by two discrete regions) on RCTD replicates object, after running CSIDE
Description
Runs on genes that were identified as significant at the population level
Usage
make_de_plots_replicates(RCTD.replicates, datadir)
Arguments
RCTD.replicates
a RCTD.replicates object after performing population-level DE inference.
datadir
output directory
Details
These plots are colored by two discrete regions based on high or low explanatory variable values.
Bold points represent expressed, whereas unbold points represent pixels not expressing the gene.
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| make_de_plots_replicates | R Documentation |
Makes spatial gene CSIDE plots (colored by two discrete regions) on RCTD replicates object, after running CSIDE
Description
Runs on genes that were identified as significant at the population level
Usage
make_de_plots_replicates(RCTD.replicates, datadir)
Arguments
RCTD.replicates |
a |
datadir |
output directory |
Details
These plots are colored by two discrete regions based on high or low explanatory variable values. Bold points represent expressed, whereas unbold points represent pixels not expressing the gene.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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