fitBulk: Performs Platform Effect Normalization:
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
View source: R/platform_effect_normalization.R
fitBulk R Documentation
Performs Platform Effect Normalization:
Description
Estimates bulk cell type composition and uses this
to estimate platform effects and normalize cell type proportions
Usage
fitBulk(RCTD)
Arguments
RCTD
an RCTD object after running the create.RCTD function.
Value
Returns an RCTD object normalized for platform effects.
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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View source: R/platform_effect_normalization.R
| fitBulk | R Documentation |
Performs Platform Effect Normalization:
Description
Estimates bulk cell type composition and uses this to estimate platform effects and normalize cell type proportions
Usage
fitBulk(RCTD)
Arguments
RCTD |
an |
Value
Returns an RCTD object normalized for platform effects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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