plot_weights_doublet: Spatially plot the weights for each cell type in doublet_mode

In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics

Spatially plot the weights for each cell type in doublet_mode

Description

Plots the weights for each cell type as in doublet_mode. Saves as 'cell_type_weights_doublet.pdf'

Usage

plot_weights_doublet(
  cell_type_names,
  puck,
  resultsdir,
  weights_doublet,
  results_df
)

Arguments

cell_type_names	list of cell type names
puck	an object of type SpatialRNA
resultsdir	output directory
weights_doublet	a dataframe of RCTD output weights for doublets (stored in the RCTD object)
results_df	dataframe of RCTD results (stored in the RCTD object)

dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.