R/HiCcompare.r

In dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

#' HiCcompare
#'
#' HiCcompare provides functions for joint normalization and difference detection in multiple Hi-C datasets.
#' HiCcompare operates on processed Hi-C data in the form of chromosome-specific chromatin interaction matrices.
#' It accepts three-column tab-separated text files storing chromatin interaction matrices in a sparse matrix format
#' which are available from several sources. HiCcompare is designed to give the user the ability to perform a comparative
#' analysis on the 3-Dimensional structure of the genomes of cells in different biological states.
#'
#' To learn more about HiCcompare, start with the vignettes:
#' `browseVignettes(package = "HiCcompare")`

"_PACKAGE"