genebysinglelocustag: Find a gene by its ID.

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find a gene by its ID. The search is case insensitive. Asterisks can be used as wild cards (e.g. ' PF11_* '). Genes whose IDs have changed can be found by either old or new ID. GI numbers (e.g. 23508535), Entrez Protein Locus IDs (e.g. NP_701204.1), PDB IDs (e.g. 1HN6), or GenBank IDs (e.g. AAB36701.1) can also be used.

Arguments

single_gene_id	Gene IDs (locus tags) are quite different for each species. We use the gene IDs provided by the sequence generator.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

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duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.