genesbygametocyteexprfoldchange: Find genes that are differentially expressed in different...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes whose expression was found to be up-regulated or down-regulated in different strains during gametocytogenesis. <br><br> <pre><b>References:</b><br>(1) Jason A. Young, Quinton L. Fivelman, Peter L. Blair, Patricia de la Vega,<br>Karine G. Le Roch, Yingyao Zhou, Daniel J. Carucci, David A. Baker, Elizabeth A. Winzeler<br><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16005087&dopt=Citation">The Plasmodium falciparum sexual development transcriptome: a microarray analysis using ontology-based pattern identification</a><br>Mol Biochem Parasitol. 2005 Jul 5; <br>(2) Zhou Y, Abagyan R.<br><a href="http://www.biomedcentral.com/1471-2105/3/3">Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis.</a><br>BMC Bioinformatics. 2002;3(1):3.</pre>

Arguments

gameto_fldchnge_strain1	Select the strain
gameto_reference	Select a time-point.
gameto_fldchnge_strain2	Select the strain
gameto_comparitor	Select a time-point.
fold_change	Enter a non-negative number. NOTE: Fold change is reported in the summary as positive numbers for up-regulated genes and negative numbers for down-regulated genes
regulated_dir	For ConditionA vs. ConditionB, select up-regulated for genes where ConditionA > ConditionB and select down-regulated for genes where ConditionB > ConditionA.
protein_coding_only	Should only protein coding genes be returned?
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.