genesbyexpressiontiming: Find genes with peaks or troughs occuring within specified...
In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description Arguments Value

Find genes with peaks or troughs occuring within specified intervals during the intraerythrocytic infection cycle. The time courses are those provided by the <a href="http://derisilab.ucsf.edu/">DeRisi Lab</a>. They are from a glass slide array and analyze HB3, 3D7, and Dd2 parasites.

`minOrMax`	Find genes where the expression level is at its highest or lowest point in the time series.
`maxExprHourFalc`	Time point where expression level was minimal or maximal
`maxPlusMinusHours`	Increase the window for examining the maximum expression time by choosing the number of hours to go in each direction (plus / minus)
`inductionFold`	Expression induction ratio reflects the change between the highest and lowest expression level for each gene over the time course.
`expressionPct`	Expression percentile reflects the expression level of one gene compared to other genes from the same array for one time point. Genes are returned if ANY time point in the series has a percentile above the chosen value.
`profileSetFalc`	Choose experiment(s) to query. Note that all of the time courses will only return genes that match the search criteria in all experiments.
`o-fields`	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`o-tables`	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`.convert`	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and `TRUE`, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is `FALSE`, the value from the Web server is returned as is.
`.url`	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
`.json`	a logical value controlling whether to use the JSON or the XML version of the method