genesbygoterm: Find genes by Gene Ontology (GO) term for molecular function,...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes by Gene Ontology (GO) term for molecular function, biological process or subcellular localization. The search finds genes with the GO term you specify and genes with terms that are specializations of your term (is-a). You may use '*' as a wild card character. For a list of GO terms, try the <a href="http://amigo.geneontology.org/cgi-bin/amigo/go.cgi">AmiGO</a> browser. For GO IDs, include the GO prefix as in "GO:0003824". <br><br>

GO term annotation was provided by the sequencing and annotation centers, and was inferred from similarity to protein domains from the <a href="http://www.ebi.ac.uk/interpro/">InterPro</a> databases.

Arguments

organism	Organism Provide one or more values. Use comma as a delimter.
go_term	Enter a GO ID (e.g. "GO:0003824") or GO Term (e.g. "catalytic activity"). Asterisks can be used as wildcard characters in a GO Term (e.g. "*kinase*")
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.