genesbykappefoldchange: Find genes by several 2 state comparisons of parasites liver,...
In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description Arguments Value

P. yoelii liver, mosquito, and red cell stage expression data from <a href="http://www.ncbi.nlm.nih.gov/pubmed/18172196?dopt=Citation">A combined transcriptome and proteome survey of malaria parasite liver stages</a>. Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):305-10. ooSpz: Sporozoites from infected A. stephensi mosquitoes midguts (harvested 10 days after mosquito feeding) sgSpz: Sporozoites from infected A. stephensi mosquitoes salivary glands (harvested 15 days after mosquito feeding) LS24: Isolated liver stage infected hepatocytes 24 hrs after in vivo infection LS40: Isolated liver stage infected hepatocytes 40 hrs after in vivo infection LS50: Isolated liver stage infected hepatocytes 50 hrs after in vivo infection Schz: Purified erythrocytic schizonts BS: mixed erythrocytic stages when parasitemia was at 5-10%

`kappeAnalysis`	Select a Comparison.
`fold_change`	Enter a non-negative number. NOTE: Fold change is reported in the summary as positive numbers for up-regulated genes and negative numbers for down-regulated genes
`regulated_dir`	For ConditionA vs. ConditionB, select up-regulated for genes where ConditionA > ConditionB and select down-regulated for genes where ConditionB > ConditionA.
`o-fields`	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`o-tables`	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`.convert`	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and `TRUE`, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is `FALSE`, the value from the Web server is returned as is.
`.url`	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
`.json`	a logical value controlling whether to use the JSON or the XML version of the method