genesbycowmansir2foldchange: Find genes that are differentially expressed between <i>P....

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

<br><br>Rings (12-18hrs), trophozoites (24-28hrs) and schizonts (38-42 hrs) were harvested from sorbitol-synchronized cultures for RNA extraction and hybridization to the custom PFSANGER Affymetrix array. <br> For further details on this study please refer to the original publication:<br> <a href="http://www.ncbi.nlm.nih.gov/pubmed/19402747">Tonkin CJ, Carret CK, Duraisingh MT, Voss TS, Ralph SA, Hommel M, Duffy MF, Silva LM, Scherf A, Ivens A, Speed TP, Beeson JG, Cowman AF. Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum. PLoS Biol. 2009 Apr 14;7(4):e84</a>.

Arguments

cowman_sir2_reference	Select a Study.
cowman_sir2_comparitor	Select a Study.
regulated_dir	For ConditionA vs. ConditionB, select up-regulated for genes where ConditionA > ConditionB and select down-regulated for genes where ConditionB > ConditionA.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.