genesbyexpressionpercentiletbrucei: Find <i>T.brucei</i> genes based on your specified expression...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes based on fold change expression difference between a "comparison" time point stage and a reference time point.

<br><br><br>Expression profiling of <i>T. brucei</i> differentiation series.<br><br>Expression profile of all trypanosome genes in rodent-derived pleomorphic slender forms, stumpy forms and at 1h, 6h, 18h, and 48h through synchronous in vitro differentiation to procyclic forms. The dataset was derived by microarray analysis (JCVI vs 3), using 5 biological replicates and was carefully tethered into a biological chacterisation of the same samples during their differentiation.<br>For additional details please access the publication: <a href="http://www.ncbi.nlm.nih.gov/pubmed/19747379">http://www.ncbi.nlm.nih.gov/pubmed/19747379</a>

Arguments

expressionPercentileExptsBrucei	Choose a Microarray Experiment
expressionPercentileSampleBrucei	Choose a Lifecycle stage Provide one or more values. Use comma as a delimter.
min_expression_percentile	Lower bound on expression percentile.
max_expression_percentile	Upper bound on expression percentile.
protein_coding_only	Should only protein coding genes be returned?
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.