genesbyecnumber: Find genes by assigned Enzyme Commission (EC) number.

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes that have been assigned a particular Enzyme Commission (EC) number. Use '-' in place of numbers to denote partial EC Numbers, for example, '2.7.7.-'. You may use '*' as a wild card character. <p> For help with obtaining EC numbers, try the <a href="http://ca.expasy.org/enzyme/">ExPASy-ENZYME</a> browser.<p> CryptoDB EC numbers have been assigned by the genome annotation centers, KEGG and CryptoCyc. PlasmoDB EC numbers have been assigned to genes for <i>P. falciparum</i> by Andy Berry, Matt Berriman (Sanger Institute) and Hagai Ginsburg (Hebrew University). ToxoDB EC numbers have been assigned by Ian Paulsen (TIGR). E.C. number annotation for <i>Toxoplasma gondii</i> are from <a href="http://www.tigr.org/~ipaulsen">Ian Paulsen</a> (TIGR)

Arguments

organism	Organism Provide one or more values. Use comma as a delimter.
ec_number_pattern	Enzyme Commission numbers describe enzymes hierarchically by the class of rections they catalize. Use '-' as a wildcard in place of numbers to denote partial EC Numbers.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

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duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.