Files in dynverse/dynmethods
A collection of trajectory inference methods
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/data.R
R/dynmethods-package.R
R/method_choose_backend.R
R/method_install_github_tagged_version.R
R/ti_angle.R
R/ti_calista.R
R/ti_cellrouter.R
R/ti_celltrails.R
R/ti_celltree_gibbs.R
R/ti_celltree_maptpx.R
R/ti_celltree_vem.R
R/ti_comp1.R
R/ti_dpt.R
R/ti_elpicycle.R
R/ti_elpigraph.R
R/ti_elpilinear.R
R/ti_embeddr.R
R/ti_error.R
R/ti_fateid.R
R/ti_forks.R
R/ti_gng.R
R/ti_gpfates.R
R/ti_grandprix.R
R/ti_identity.R
R/ti_matcher.R
R/ti_merlot.R
R/ti_mfa.R
R/ti_monocle_ddrtree.R
R/ti_monocle_ica.R
R/ti_mpath.R
R/ti_mst.R
R/ti_oscope.R
R/ti_ouija.R
R/ti_ouijaflow.R
R/ti_paga.R
R/ti_paga_tree.R
R/ti_pcreode.R
R/ti_periodpc.R
R/ti_phenopath.R
R/ti_projected_dpt.R
R/ti_projected_monocle.R
R/ti_projected_paga.R
R/ti_projected_slingshot.R
R/ti_projected_tscan.R
R/ti_pseudogp.R
R/ti_raceid_stemid.R
R/ti_random.R
R/ti_recat.R
R/ti_scimitar.R
R/ti_scorpius.R
R/ti_scoup.R
R/ti_scuba.R
R/ti_shuffle.R
R/ti_sincell.R
R/ti_slice.R
R/ti_slicer.R
R/ti_slingshot.R
R/ti_stemnet.R
R/ti_topslam.R
R/ti_tscan.R
R/ti_urd.R
R/ti_wanderlust.R
R/ti_waterfall.R
R/ti_wishbone.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/1-generate_r_code_from_containers.R
data-raw/1a-helper_functions.R
data-raw/add_new_container.R
data-raw/populate_dockerhub.R
data-raw/version_bump_containersR
data/methods.rda
dynmethods.Rproj
inst/CITATION
man/dynmethods.Rd
man/figures/dependencies.png
man/figures/docker_logo.png
man/figures/doi_logo.png
man/figures/github_logo.png
man/figures/logo.png
man/figures/logo.svg
man/figures/orcid_logo.svg
man/figures/r_logo.png
man/install_github_tagged_version.Rd
man/methods.Rd
man/ti_angle.Rd
man/ti_calista.Rd
man/ti_cellrouter.Rd
man/ti_celltrails.Rd
man/ti_celltree_gibbs.Rd
man/ti_celltree_maptpx.Rd
man/ti_celltree_vem.Rd
man/ti_comp1.Rd
man/ti_dpt.Rd
man/ti_elpicycle.Rd
man/ti_elpigraph.Rd
man/ti_elpilinear.Rd
man/ti_embeddr.Rd
man/ti_error.Rd
man/ti_fateid.Rd
man/ti_forks.Rd
man/ti_gng.Rd
man/ti_gpfates.Rd
man/ti_grandprix.Rd
man/ti_identity.Rd
man/ti_matcher.Rd
man/ti_merlot.Rd
man/ti_mfa.Rd
man/ti_monocle_ddrtree.Rd
man/ti_monocle_ica.Rd
man/ti_mpath.Rd
man/ti_mst.Rd
man/ti_oscope.Rd
man/ti_ouija.Rd
man/ti_ouijaflow.Rd
man/ti_paga.Rd
man/ti_paga_tree.Rd
man/ti_pcreode.Rd
man/ti_periodpc.Rd
man/ti_phenopath.Rd
man/ti_projected_dpt.Rd
man/ti_projected_monocle.Rd
man/ti_projected_paga.Rd
man/ti_projected_slingshot.Rd
man/ti_projected_tscan.Rd
man/ti_pseudogp.Rd
man/ti_raceid_stemid.Rd
man/ti_random.Rd
man/ti_recat.Rd
man/ti_scimitar.Rd
man/ti_scorpius.Rd
man/ti_scoup.Rd
man/ti_scuba.Rd
man/ti_shuffle.Rd
man/ti_sincell.Rd
man/ti_slice.Rd
man/ti_slicer.Rd
man/ti_slingshot.Rd
man/ti_stemnet.Rd
man/ti_topslam.Rd
man/ti_tscan.Rd
man/ti_urd.Rd
man/ti_wanderlust.Rd
man/ti_waterfall.Rd
man/ti_wishbone.Rd
template_container/Dockerfile
template_container/credentials.enc
template_container/definition.yml
template_container/definition_clean.yml
template_container/example.R
template_container/run.R
template_container/run.py
template_container/version
tests/testthat.R
tests/testthat/test-data.R
tests/testthat/test-method.R
