dispatch_csv_search: Pull some information from a csv/tsv file.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Pull some information from a csv/tsv file.

Description

This function is a bit more generic than the others, but it grabs from a column of a csv/tsv file.

Usage

dispatch_csv_search(
  meta,
  column,
  input_file_spec,
  file_type = "csv",
  chosen_func = NULL,
  species = "*",
  type = "genome",
  basedir = "preprocessing",
  which = "first",
  verbose = FALSE,
  ...
)

Arguments

meta	Input metadata
column	Column to yank from
input_file_spec	Input file specification to hunt down the file of interest.
file_type	csv or tsv?
chosen_func	If set, use this function to summarize the result.
species	Specify a species, or glob it.
type	Specify a type of search, usually genome and/or rRNA.
basedir	Root directory containing the files/logs of metadata.
which	Take the first entry, or some subset.
verbose	Print diagnostic information while running?
...	Other arguments for glue.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.