dispatch_filename_search: Pull out the filename matching an input spec

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Pull out the filename matching an input spec

Description

This is useful for putting the count table name into a metadata file.

Usage

dispatch_filename_search(
  meta,
  input_file_spec,
  verbose = verbose,
  species = "*",
  type = "genome",
  basedir = "preprocessing"
)

Arguments

meta	Input metadata
input_file_spec	Input file specification to hunt down the file of interest.
verbose	Print diagnostic information while running?
species	Specify a species to search for, or '*' for anything.
type	Some likely filename searches may be for genome vs. rRNA vs other feature types.
basedir	Root directory containing the files/logs of metadata.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.