get_res: Attempt to get residuals from tsne data

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Attempt to get residuals from tsne data

Description

I strongly suspect that this is not correct, but it is a start.

Usage

get_res(
  svd_result,
  design,
  factors = c("condition", "batch"),
  res_slot = "v",
  var_slot = "d"
)

Arguments

svd_result	The set of results from one of the many potential svd-ish methods.
design	Experimental design from which to get experimental factors.
factors	Set of experimental factors for which to calculate rsquared values.
res_slot	Where is the res data in the svd result?
var_slot	Where is the var data in the svd result?

Value

Data frame of rsquared values and cumulative sums.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.