guess_orgdb_keytype: Iterate over keytypes looking for matches against a set of...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/annotation_orgdb.R
guess_orgdb_keytype R Documentation
Iterate over keytypes looking for matches against a set of IDs.
Description
Sometimes, one does not know what the correct keytype is for a given set of
IDs. This will hopefully find them.
Usage
guess_orgdb_keytype(ids, orgdb = NULL, verbose = FALSE)
Arguments
ids
Set of gene IDs to seek.
orgdb
Orgdb instance to iterate through.
verbose
talky talk
Value
Likely keytype which provides the desired IDs.
See Also
[org.Dm.eg.db]
Examples
ids <- c("Dm.9", "Dm.2294", "Dm.4971")
dm_orgdb <- "org.Dm.eg.db"
keytype_guess <- guess_orgdb_keytype(ids, dm_orgdb)
keytype_guess
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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View source: R/annotation_orgdb.R
| guess_orgdb_keytype | R Documentation |
Iterate over keytypes looking for matches against a set of IDs.
Description
Sometimes, one does not know what the correct keytype is for a given set of IDs. This will hopefully find them.
Usage
guess_orgdb_keytype(ids, orgdb = NULL, verbose = FALSE)
Arguments
ids |
Set of gene IDs to seek. |
orgdb |
Orgdb instance to iterate through. |
verbose |
talky talk |
Value
Likely keytype which provides the desired IDs.
See Also
[org.Dm.eg.db]
Examples
ids <- c("Dm.9", "Dm.2294", "Dm.4971")
dm_orgdb <- "org.Dm.eg.db"
keytype_guess <- guess_orgdb_keytype(ids, dm_orgdb)
keytype_guess
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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