hpgl_GOplot: A minor hack of the topGO GOplot function.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A minor hack of the topGO GOplot function.

Description

This allows me to change the line widths from the default.

Usage

hpgl_GOplot(
  dag,
  sigNodes,
  dag.name = "GO terms",
  edgeTypes = TRUE,
  nodeShape.type = c("box", "circle", "ellipse", "plaintext")[3],
  genNodes = NULL,
  wantedNodes = NULL,
  showEdges = TRUE,
  useFullNames = TRUE,
  oldSigNodes = NULL,
  nodeInfo = NULL,
  maxchars = 30
)

Arguments

dag	DAG tree of ontologies.
sigNodes	Set of significant ontologies (with p-values).
dag.name	Name for the graph.
edgeTypes	Types of the edges for graphviz.
nodeShape.type	Shapes on the tree.
genNodes	Generate the nodes?
wantedNodes	Subset of the ontologies to plot.
showEdges	Show the arrows?
useFullNames	Full names of the ontologies (they can get long).
oldSigNodes	I dunno.
nodeInfo	Hmm.
maxchars	Maximum characters per line inside the shapes.

Value

Topgo plot!

See Also

[topGO]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.