my_isva: There are some funky scoping problems in isva::DoISVA().

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

There are some funky scoping problems in isva::DoISVA().

Description

Thus I copy/pasted the function and attempted to address them here.

Usage

my_isva(
  data.m,
  pheno.v,
  cf.m = NULL,
  factor.log = FALSE,
  pvthCF = 0.01,
  th = 0.05,
  ncomp = NULL,
  icamethod = "fastICA"
)

Arguments

data.m	Input matrix.
pheno.v	Vector of conditions of interest in the data.
cf.m	Matrix of confounded conditions in the data.
factor.log	I forget.
pvthCF	Minimal p-value for considering.
th	threshold for inclusion.
ncomp	Number of SVA components to estimate.
icamethod	Which ICA implementation to use?

See Also

[isva]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.