orgdb_from_ah: Get an orgdb from an AnnotationHub taxonID.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Get an orgdb from an AnnotationHub taxonID.

Description

Ideally, annotationhub will one day provide a one-stop shopping source for a tremendous wealth of curated annotation databases, sort of like a non-obnoxious biomart. But for the moment, this function is more fragile than I would like.

Usage

orgdb_from_ah(ahid = NULL, title = NULL, species = NULL, type = "OrgDb")

Arguments

ahid	TaxonID from AnnotationHub
title	Title for the annotation hub instance
species	Species to download
type	Datatype to download

Value

An Orgdb instance

See Also

[AnnotationHub] [S4Vectors]

Examples

## Not run: 
 org <- mytaxIdToOrgDb(species = "Leishmania", type = "TxDb")

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.