steal_salmon_tx_ids: Steal transcript IDs from the first count table.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Steal transcript IDs from the first count table.

Description

Steal transcript IDs from the first count table.

Usage

steal_salmon_tx_ids(
  meta,
  annotations,
  meta_column = "salmon_count_table",
  annot_gene_column = "ensembl_gene_id",
  annot_tx_column = "ensembl_transcript_id",
  keep_unique = TRUE
)

Arguments

meta	Input metadata containing the salmon count table names.
annotations	Extant set of gene annotations, likely from biomart.
meta_column	metadata column with the filenames.
annot_gene_column	Column of annotations with the gene IDs.
annot_tx_column	Column of annotations with the transcript IDs.
keep_unique	Drop the potential duplicate GIDs?

Value

List containing modified annotations for the genes, transcripts, and the map between them.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.