topgo_tables: Make pretty tables out of topGO data

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make pretty tables out of topGO data

Description

The topgo function GenTable is neat, but it needs some simplification to not be obnoxious.

Usage

topgo_tables(
  result,
  godata,
  limit = 0.1,
  limitby = "fisher",
  numchar = 300,
  orderby = "fisher",
  ranksof = "fisher"
)

Arguments

result	Topgo result.
godata	The ontology database.
limit	Pvalue limit defining 'significant'.
limitby	Type of test to perform.
numchar	How many characters to allow in the description?
orderby	Which of the available columns to order the table by?
ranksof	Which of the available columns are used to rank the data?

Value

prettier tables

See Also

[topGO]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.