addDiseaseLayer: Add OMIM Layer with its respective Nodes
In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs
addDiseaseLayer R Documentation
Add OMIM Layer with its respective Nodes
Description
Add OMIM Layer with its respective Nodes
Usage
addDiseaseLayer(g, biopax, addGenesLayer = FALSE)
Arguments
g
A Mully graph
biopax
A Biopax object
Value
g A Mully graph including OMIM nodes and possible edges
Note
should be preceded by calling romim::set_key('KEY'). The KEY could be requested via omim's official website.
Author(s)
Mohammad Al Maaz
Examples
biopax=readBiopax("wnt.owl") #This is a mully graph that contains a protein layer
pathwayID=listPathways(biopax)$id[1]
g=Multipath::pathway2Mully(biopax,pathwayID)
g=addGenesLayer(g,biopax)
g=addDiseaseLayer(g,biopax)
frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.
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| addDiseaseLayer | R Documentation |
Add OMIM Layer with its respective Nodes
Description
Add OMIM Layer with its respective Nodes
Usage
addDiseaseLayer(g, biopax, addGenesLayer = FALSE)
Arguments
g |
A Mully graph |
biopax |
A Biopax object |
Value
g A Mully graph including OMIM nodes and possible edges
Note
should be preceded by calling romim::set_key('KEY'). The KEY could be requested via omim's official website.
Author(s)
Mohammad Al Maaz
Examples
biopax=readBiopax("wnt.owl") #This is a mully graph that contains a protein layer
pathwayID=listPathways(biopax)$id[1]
g=Multipath::pathway2Mully(biopax,pathwayID)
g=addGenesLayer(g,biopax)
g=addDiseaseLayer(g,biopax)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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