getRelatedGenes: Get proteins that has a reference to KEGG Genes from a mully...
In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs
getRelatedGenes R Documentation
Get proteins that has a reference to KEGG Genes from a mully graph and a biopax
Description
Get proteins that has a reference to KEGG Genes from a mully graph and a biopax
Usage
getRelatedGenes(g, biopax)
Arguments
g
A Mully graph
biopax
A biopax file
Value
List of Protein
Examples
downloadPathway("R-HSA-195721",biopax=3)
biopax=readBiopax("R-HSA-195721.owl")
pathwayID=listPathways(biopax)$id[1]
g=pathway2Mully (biopax, pathwayID)
relatedGenes = getRelatedGenes(g,biopax)
frankkramer-lab/Multipath documentation built on June 12, 2025, noon
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| getRelatedGenes | R Documentation |
Get proteins that has a reference to KEGG Genes from a mully graph and a biopax
Description
Get proteins that has a reference to KEGG Genes from a mully graph and a biopax
Usage
getRelatedGenes(g, biopax)
Arguments
g |
A Mully graph |
biopax |
A biopax file |
Value
List of Protein
Examples
downloadPathway("R-HSA-195721",biopax=3)
biopax=readBiopax("R-HSA-195721.owl")
pathwayID=listPathways(biopax)$id[1]
g=pathway2Mully (biopax, pathwayID)
relatedGenes = getRelatedGenes(g,biopax)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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