getPathwayID: Get internal pathway ID in a BioPAX file
In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs
getPathwayID R Documentation
Get internal pathway ID in a BioPAX file
Description
Get internal pathway ID in a BioPAX file
Usage
getPathwayID(biopax, reactomeID)
Arguments
biopax
The biopax object
reactomeID
The Reactome ID of the pathway
Value
The internal ID of the pathway in the parsed BioPAX object
Note
This should be preceded by readBiopax(filepath) to obtain the biopax object
Examples
## Not run:
biopax=readBiopax(pi3k.owl)
id=getPathwayID(biopax,"R-HSA-167057")
pi3kmully=pathway2mully(biopax,id)
## End(Not run)
frankkramer-lab/Multipath documentation built on June 12, 2025, noon
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| getPathwayID | R Documentation |
Get internal pathway ID in a BioPAX file
Description
Get internal pathway ID in a BioPAX file
Usage
getPathwayID(biopax, reactomeID)
Arguments
biopax |
The biopax object |
reactomeID |
The Reactome ID of the pathway |
Value
The internal ID of the pathway in the parsed BioPAX object
Note
This should be preceded by readBiopax(filepath) to obtain the biopax object
Examples
## Not run:
biopax=readBiopax(pi3k.owl)
id=getPathwayID(biopax,"R-HSA-167057")
pi3kmully=pathway2mully(biopax,id)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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