addUPKBLayer: Add a protein layer to a mully graph

In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs

Add a protein layer to a mully graph

Description

Add a protein layer to a mully graph

Usage

addUPKBLayer(
  g,
  up,
  proteinList,
  col = c("UniProtKB", "protein_name", "organism_name")
)

Arguments

g	The mully graph
up	The UniProt.ws Object
proteinList	The list of UniProt Ids of the proteins to be added
col	The list of attributes associated to the UniProtKB Entries to be retrieved

Value

The mully graph with the added UniProt layer

Note

Should be preceded by UniProt.ws() to get the UniProt.ws Object

Examples

## Not run:  
up=UniProt.ws()
g=mully("UniProt")
g=addUPKBLayer(g,up,proteinList=c("P02747","P00734","P07204"),col=c("UniProtKB","protein_name"))

## End(Not run)

frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.