getUPKBRelatedDiseases: Get proteins that has a reference to OMIM from a mully graph...

In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs

Get proteins that has a reference to OMIM from a mully graph and a biopax

Description

Get proteins that has a reference to OMIM from a mully graph and a biopax

Usage

getUPKBRelatedDiseases(g, biopax)

Arguments

g	A Mully graph
biopax	A biopax file

Value

Dataframe of Proteins-OMIM relation

Note

should be preceded by calling romim::set_key('KEY'). The KEY could be requested via omim's official website.

Author(s)

Mohammad Al Maaz

Examples

biopax=readBiopax("wnt.owl") 
pathwayID=listPathways(biopax)$id[1]
g=Multipath::pathway2Mully(biopax,pathwayID) #This is a mully graph that contains a protein layer
getUPKBRelatedDiseases(g,biopax)

frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.