getDBtoUPKB: Get DrugBank Drugs to UniProt Proteins Relations from...

In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs

Get DrugBank Drugs to UniProt Proteins Relations from DrugBank

Description

Get DrugBank Drugs to UniProt Proteins Relations from DrugBank

Usage

getDBtoUPKB(data, drugList, proteinList)

Arguments

data	The dataframe containing the parsed information of DrugBank. This argument can be obtained using the function loadDBXML(DrugBankFile)
drugList	The list of DrugBank Ids of the drugs. This argument can be either a string (one drug) or a list of strings (multiple drugs)
proteinList	The list of UniProt Ids of the proteins

Value

A dataframe containing the connections between DrugBank drugs and UniProt proteins retrieved from DrugBank

Examples

## Not run:  
data=readDBXML(DBXMLFilePath)
getDBtoUPKB(data,c("DB00001","DB00002","DB00006"),c("P02747","P00734","P07204","P05164"))

## End(Not run)

frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.