getKeggUpkbRelations: Gets the genes and proteins that are referenced to each other
In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs
getKeggUpkbRelations R Documentation
Gets the genes and proteins that are referenced to each other
Description
Gets the genes and proteins that are referenced to each other
Usage
getKeggUpkbRelations(g, biopax)
Arguments
g
A Mully graph object
biopax
A biopax object
Value
Dataframe of related proteins and genes
Author(s)
Mohammad Al Maaz
Examples
up = UniProt.ws()
biopax=readBiopax("wnt.owl")
pathwayID=listPathways(biopax)$id[1]
g=Multipath::pathway2Mully(biopax,pathwayID) #This is a mully graph that contains a protein layer
g=addGenesLayer(g,biopax)
UPKB2KEGG = getUPKBtoKEGG(g, biopax)
frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.
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| getKeggUpkbRelations | R Documentation |
Gets the genes and proteins that are referenced to each other
Description
Gets the genes and proteins that are referenced to each other
Usage
getKeggUpkbRelations(g, biopax)
Arguments
g |
A Mully graph object |
biopax |
A biopax object |
Value
Dataframe of related proteins and genes
Author(s)
Mohammad Al Maaz
Examples
up = UniProt.ws()
biopax=readBiopax("wnt.owl")
pathwayID=listPathways(biopax)$id[1]
g=Multipath::pathway2Mully(biopax,pathwayID) #This is a mully graph that contains a protein layer
g=addGenesLayer(g,biopax)
UPKB2KEGG = getUPKBtoKEGG(g, biopax)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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