downloadPathway: Download Reactome Pathways in BioPAX level 2 and 3

In frankkramer-lab/Multipath: Pathway Data Integration With Influencing Knowledge Using Multi-Layered Graphs

Download Reactome Pathways in BioPAX level 2 and 3

Description

Download Reactome Pathways in BioPAX level 2 and 3

Usage

downloadPathway(pathwayID, biopaxLevel = "3", destDirectory, overwrite = F)

Arguments

pathwayID	The Reactome ID or list of IDs of the pathways to be downloaded. The ID should start with R-HSA-.
biopaxLevel	The BioPAX Level, 2 or 3. By default set to 3.
destDirectory	The Directory in which the Pathway Files should be saved. If missing, the files are saved in the working directory. The Reactome IDs are used to name the files.
overwrite	A Boolean whether to overwrite existing files with the same name.

Value

The Directory in which the files are saved.

Examples

## Not run:  
downloadPathway(c("R-HSA-195721","R-HSA-9609507"),biopaxLevel=3,overwrite=T)

## End(Not run)

frankkramer-lab/Multipath documentation built on April 30, 2023, 6:08 p.m.