API for hesselberthlab/scrunchy
Single Cell Reconstruction of Functional Heterogeneity
| Global functions | |
|---|---|
| FunctionalSingleCellExperiment | Man page Source code |
| FunctionalSingleCellExperiment-class | Man page |
| add_group_labels | Source code |
| add_label | Man page Source code |
| add_stats | Man page Source code |
| anova_fun | Source code |
| build_cell_map | Source code |
| build_sample_map | Source code |
| calc_cell_cycle | Man page Source code |
| calc_hairpin_coverage | Man page Source code |
| calc_pca | Man page Source code |
| calc_qvalues | Man page Source code |
| calc_tsne | Man page Source code |
| calc_umap | Man page Source code |
| calc_var_features | Man page Source code |
| centroids | Source code |
| clr_normalize | Man page Source code |
| cluster_kmeans | Man page Source code |
| cluster_leiden | Man page Source code |
| compute_snn_impl | Source code |
| count_cols | Source code |
| counts_tbl | Source code |
| create_fsce | Man page Source code |
| create_sce_feature | Man page Source code |
| create_sce_haircut | Man page Source code |
| create_sce_rnaseq | Man page Source code |
| cross_groups | Source code |
| dim_tbl | Source code |
| dims_tbl | Source code |
| expt_cells | Source code |
| extract_cell_ids | Source code |
| filter_matrix | Man page Source code |
| filter_molecules | Man page Source code |
| find_shared_cells | Source code |
| fold_change | Source code |
| fsce_small | Man page |
| fsce_tidy | Man page |
| group_stat | Source code |
| human_gene_ids | Man page |
| is.molecule_df | Man page Source code |
| is_any_matrix | Source code |
| is_discrete | Source code |
| is_sparse | Source code |
| legend_limits | Source code |
| log_normalize | Man page Source code |
| molecule_df | Man page Source code |
| n_colors | Source code |
| normalize | Man page |
| normalize,SingleCellExperiment-method | Man page |
| palette_OkabeIto | Man page |
| palette_OkabeIto_black | Man page |
| pbmc_marker_genes | Man page |
| pcvariance_tbl | Source code |
| plot_activity | Man page Source code |
| plot_barcodes | Man page Source code |
| plot_dims | Man page Source code |
| plot_dims_multi | Man page Source code |
| plot_hairpin_coverage | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_pcvariance | Man page Source code |
| plot_saturation | Man page Source code |
| read_matrix | Man page Source code |
| read_molecules | Man page Source code |
| scale_OkabeIto | Man page Source code |
| scale_color_OkabeIto | Man page |
| scale_colour_OkabeIto | Man page Source code |
| scale_fill_OkabeIto | Man page Source code |
| scrunchy | Man page |
| scrunchy-package | Man page |
| scrunchy_data | Man page Source code |
| stat_activity_grouped | Man page Source code |
| stat_anova_grouped | Man page Source code |
| stat_anova_tukey | Man page Source code |
| tidy_all | Man page Source code |
| tidy_coldata | Man page Source code |
| tidy_counts | Man page Source code |
| tidy_dims | Man page Source code |
| tidy_logcounts | Man page Source code |
| tidy_stats_grouped | Man page Source code |
| tidy_wilcoxon | Source code |
| tukey_fun | Source code |
| umitools_to_mtx | Man page Source code |
| unframe | Source code |
| unique_inds | Source code |
| write_matrix | Man page Source code |
