tidy_dims: Tidy reducedDims data

In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity

Description

Tidy reducedDims data

Usage

tidy_dims(fsce, dimnames = NULL, dims = c(1, 2))

Arguments

fsce	An object of class FunctionalSingleCellExperiment.
dimnames	vector of dimnames to retrieve. If NULL, retrieve all dimnames.
dims	vector of dimensions to retrieve

Tidying

This is a data tidier for a FunctionalSingleCellExperiment. Returns data from SingleCellExperiment in a tidy format, where variables are columns and observations are rows.

If the FunctionalSingleCellExperiment contains more than one SingleCellExperiment, data from each sce are joined using the cell_id variable name, and a new experiment column contains the name of the source sce.

See Also

Other tidiers: tidy_all, tidy_coldata, tidy_counts, tidy_logcounts

Examples

tidy_dims(fsce_small)

tidy_dims(fsce_small, dimnames = c("UMAP"))

hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.