Description Usage Arguments References Examples
Uses scran::cyclone()
to assign cell-cycle phases to each cell.
Assignments are available in colData
in the cell_cycle
slot.
1 | calc_cell_cycle(fsce, expt = "rnaseq", org = "human", ...)
|
fsce |
|
expt |
Data to use for calculating variable features
(default is |
org |
organism for gene pairs, human or mouse |
... |
additional params for |
Scialdone A, Natarajana KN, Saraiva LR et al. (2015). Computational assignment of cell-cycle stage from single-cell transcriptome data. Methods 85:54–61
1 2 | fsce_small <- calc_cell_cycle(fsce_small)
SingleCellExperiment::colData(fsce_small[["rnaseq"]])
|
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