clr_normalize: Centered log-ratio normalization

Description Usage Arguments Value See Also

View source: R/normalize.R

Description

This normalization strategy is used for CITE-seq and other feature data in Seurat.

Usage

1

Arguments

mat

input matrix

Value

matrix of normalized values. Normalization performed by dividing each value by the geometric mean of all values for a cell, returning log values.

See Also

https://stackoverflow.com/questions/2602583/geometric-mean-is-there-a-built-in


hesselberthlab/scrunchy documentation built on Dec. 11, 2018, 1:30 a.m.