clr_normalize: Centered log-ratio normalize a matrix
In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity
Description
Usage
Arguments
Details
Value
See Also
Description
Normalization performed by dividing each value by the geometric mean of all
values for a cell, returning log values.
Usage
1
clr_normalize(mat)
Arguments
mat
input matrix
Details
This normalization strategy is used for CITE-seq and other feature data in
Seurat.
Value
matrix of normalized values.
See Also
https://stackoverflow.com/questions/2602583/geometric-mean-is-there-a-built-in
Other normalization methods: log_normalize
hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also
Description
Normalization performed by dividing each value by the geometric mean of all values for a cell, returning log values.
Usage
1 | clr_normalize(mat)
|
Arguments
mat |
input matrix |
Details
This normalization strategy is used for CITE-seq and other feature data in Seurat.
Value
matrix of normalized values.
See Also
https://stackoverflow.com/questions/2602583/geometric-mean-is-there-a-built-in
Other normalization methods: log_normalize
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.