Description Usage Arguments Details Value References Examples
Data is assumed to be tidy with a single grouping variable; all other
variables are treated as activities to compare. Descriptive columns like
cell_id
should not be included.
1 | stat_activity_grouped(tbl, group, complete = FALSE, ...)
|
tbl |
data from a |
group |
variable for generating combinations |
complete |
If |
... |
additional parameters to pass to |
Applies stats::wilcox.test()
to unique pairs of groups for each measured
variable. Adjusted p-values are calculated using qvalue::qvalue()
. A
ratio of activity in each group is reported; Inf
values indicate that
no activities were measured for the second group.
tibble, sorted by q.value
activity
group
group1
ratio
(ratio of the median signals in group
over group1
)
p.value
q.value
1 2 | x <- fsce_tidy[c("k_cluster", "Uracil_45", "riboG_44")]
stat_activity_grouped(x, group = k_cluster)
|
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